This is our top-level category; looking at it another way, it is the root category.
Ideally, every other category should be a subcategory of at least one other, and every article should be in at least one category; many will fit well into two or more (e.g. location, year, and subject-matter).
The "Yu-Gi-Oh!" category is intended for all articles about Yu-Gi-Oh!, whilst "Yu-Gi-Oh! Wiki" is intended for all administrative matters. A full list of existing categories can be found at Special:Categories.
To add a new category to a page, just add
[[Category:Categoryname]] to the end of the article or existing category page.