Changes

Yugi manages to regain a spot in the finals as Mai gives him her excessive Star Chips, in thanks for winning hers back off PaniK. Yami Yugi faces Mai in the first round of the finals, but patronizes her and only thinks of facing Pegasus. This leads to a lot of bad plays on Yugi's behalf. (In the dub, Yugi refuses to let Yami Duel, in fear that he may harm his opponent, like he was willing to harm Kaiba. Yami tries to talk Yugi into letting him Duel, as Yugi puts up a weak fight. After talking with Mai about facing fears, Yugi lets Yami take control.) Having faith in his friends and everyone depending on him, Yami Summons the "[[Black Luster Soldier (anime)|Black Luster Soldier]]" and uses it to defeat Mai.

Yami Yugi faces Joey in the finals. Despite being friends, neither player holds back. Joey uses all he's learnt from the Yugis in the past and puts up a close Duel. Both players begin crying as Yami makes his final move winning the Duel.

Yami proceeds to face Pegasus in the finals. His souls is at stake as he battles for the release of Grandpa and the Kaiba brother's souls. Pegasus dominates the Duel at an early stage, with his [[Toon monster]]s and using his [[Millennium Eye]] to read Yami's mind. Yami talks with Yugi, who gets the idea to continually switch control of his body. This way after Yugi makes a move, he switches to Yami, whose mind Pegasus then reads. This causes Pegasus to not see what cards are played [[face-down]] and where Yugi hides "Dark Magician" under "[[Magical Hats (anime)|Magical Hats]]". Pegasus uses "[[Magical Neutralizing Force]]" to remove the hats, but Yami uses a cards Yugi Set, "[[Living Arrow (anime)|Living Arrow]]", which copies "Magical Neutralizing Force", which destroys "[[Toon World (anime)|Toon World]]", and "[[Mirror Force (anime)|Mirror Force]]" destroys Pegasus' Toons. Pegasus then takes the Duel to the [[Shadow Realm]] and uses his eye-themed monsters. Yugi, unable to cope with the [[Shadow Realm]] passes out after a few turns, setting a card as he does so.

Yami struggles with continuing the Duel alone. He then gets a vision of Grandpa, who tells that Yugi may not physically be with him, but his spirit still is. When Pegasus tries to read Yami's mind, the card he drew is blocked because of Téa, Tristan, and Joey spiritually bonding together to support Yami. Yami manages to counter Pegasus strategy, using the last card Yugi set, "[[Dark Magic Ritual (anime)|Dark Magic Ritual]]" and a combination of Magic Cards, resulting in the "[[Magician of Black Chaos (anime)|Magician of Black Chaos]]" being pitted against Pegasus' "[[Thousand-Eyes Restrict (anime)|Thousand-Eyes Restrict]]". Using "Multiply" "Thousand Eyes Restrict" is forced to absorb a "[[Kuriboh Token (anime)|Kuriboh Token]]" and has each of its eyes covered, freeing the Magician from its paralysis. "Magician of Black Chaos" attacks "Thousand-Eyes Restrict", winning the Duel. Later, he discovered Pegasus' true intentions when Téa read his diary. After the Kaibas' souls were free and the gang was leaving, Yugi asked Yami Yugi what his name was. He replied by saying that he has been called many things throughout the ages-Pharaoh, Yu-Gi-Oh or Yami, which he seems to prefer more.