After freeing Jesse from Yubel's influence, Jaden decides to stop his former misguided friend once and for all. Before he goes to confront Yubel, Jaden is given Jesse's deck (even though he only uses Jesse's Rainbow Dragon in the Duel) and the blessings of his remaining friends. While on his way, Jaden finds out that Yubel has been exposed to the Light of Destruction (This is not mentioned in the English dub, but the scene with the Light is still shown), and attempts to free it from the radiance's influence, but to no avail.
Syrus later decides to be the eyewitness to this grand confrontation, and thus, he follows Jaden. On his way to the event, Syrus suddenly sees Chazz, who informs him that he and the others are trapped in another alternate dimension.
Meanwhile, Jaden and Yubel start their Duel. Yubel starts the duel with her Spell Chronicle card, (which she says will record their future together), but her true intention is to gain Super Polymerization (which she removes from play with her "Chronicle" card) and fuse the 12 Duel Monster Spirit Dimensions into one. She expects Jaden to add the removed Super Polymerization to her hand. Even though he (predictably) doesn't, Jaden quickly falls behind when Yubel summons itself and uses its effect to inflict massive damage to Jaden's life points. As the duel progresses, Jaden quickly realizes that any attempts at negotiation with the deranged Yubel prove fruitless and instead he resolves to destroy Yubel, ultimately calling forth his Dark half, The Supreme King.
Activates Spell Chronicle. Now she can take 5 cards from her Deck and remove them from play. She chooses Zero Sprite, Fiend Rose, Mystical Space Typhoon, Grinder Golem and Super Polymerization. Also, for every 2 Spell Cards her opponent (Jaden) activates, she can allow him to choose one of the cards she removed from play, and it will return to her hand. (NOTE: In the real game, Spell Chronicle requires the player to discard his entire hand, and it only allows the removal of Spells and Traps; also, if "Spell Chronicle" is removed from the field while cards are still removed from play—which never happened during this Duel—the controller takes 500 points of damage per card removed via this effect.)
Since her Regenerating Rose's effect only activates while the monster it's battling is in Attack Position, its ATK drops back to 0, and she cancels her attack.
With 2 Chronicle Counters on her Spell Chronicle, Yubel removes them and activates its effect, allowing Jaden to select 1 of the 5 cards she removed from play to add to her hand. Jaden selects Zero Sprite, which returns to Yubel's hand
Sets a card and then tributes her 2 Rose Tokens tokens to summon Yubel (0/0) in Attack Position (Notably, unlike most other Duel Monster Spirits who have participated in Duels, the original Yubel does not step onto the field; instead, a clone of herself is summoned.)
Yubel attacks Elemental Hero Sparkman with her Card Appearances:Yubel on the field and activates her Yubel's effect; it is not destroyed in battle, and Jaden receives the damage the original Yubel would have taken from the battle (Jaden: 2400 LP) (IMPORTANT: the real Yubel card does not have this effect; instead, your opponent must target an Attack-PositionYubel you control in battle, and it deals damage equal to the ATK of the attacking monster your opponent controls.)
Since Samsara Lotus is in her Graveyard, she activates its effect and Special Summons it (0/0) in Defense Position (NOTE: the real Samsara Lotus card can only activate this effect if you control no Spells or Traps). If Yubel does not Tribute a monster, her Yubel on the field will be destroyed; she tributes Samsara Lotus for Yubel's effect.
However, Yubel activates her face-down Zero Sprite (after taunting Jaden that he allowed her to gain that card), which is equipped to her Yubel, reducing its ATK to 0 (which is moot, since it already has 0 ATK), but allowing it to attack twice
Activates his Neo-Spacian Air Hummingbird's effect, gaining 500 LP for each card in Yubel's hand; she has 3 cards, so he gains back 1500 LP (Jaden: 2500 LP)
Attacks with Neo-Spacian Twinkle Moss and activates its effect, drawing 1 card. It gains the appropriate effect, depending on the card he draws. He draws and shows Space Gift to Yubel. Since he drew a Spell Card with Neo-Spacian Twinkle Moss' effect, it can attack Yubel directly (Yubel: 3400 LP)
Activates the Space Gift he just drew, allowing him to draw 1 card for every different Neo-Spacian he controls. He controls 3, so he draws 3 cards
Sets a card
Yubel's Turn
With 2 Chronicle Counters on her Spell Chronicle, Yubel removes them and activates its effect, allowing Jaden to select 1 of the remaining 4 cards she removed from play; he selects Fiend Rose to return to her hand
Activates Samsara Lotus' effect, returning it to the field and tributing it for Yubel's effect.
Jaden's Turn
Activates his Neo-Spacian Air Hummingbird's effect, gaining 500 LP for each card in Yubel's hand; she still has 3 cards, so he gains back 1500 LP (Jaden: 2800 LP)
With her Yubel destroyed by another effect besides its own, Yubel activates its effect and Special Summons her Yubel - Terror Incarnate form (0/0) (NOTE: In the real game, this would not work, as Yubel's effect would miss the timing due to Hate Buster's final effect)
Merges and attacks Aqua Dolphin with Yubel - Terror Incarnate, activating her evolved form's effect; like her original form, it is not destroyed in battle, and instead, Jaden takes all the damage Yubel would have taken from the battle (Jaden: 1300 LP) (NOTE: Like the original Yubel, this card does not have this effect; instead, your opponent must target Yubel - Terror Incarnate in battle, and it deals damage equal to the ATK of the attacking monster your opponent controls.)
Activates Samsara Lotus' effect, returning it to the field
When he draws Polymerization, he freezes up, until Neo-Spacian Aqua Dolphin offers to be a Tribute and reminds Jaden that he needs to face his inner darkness.
Activates Fake Hero, allowing him to summon an Elemental Hero from his hand, but it must return to his hand at the end of his turn; he chooses Elemental Hero Neos (2500/2000)
Activates Elemental Hero Prisma's effect, choosing a Fusion Monster from his Deck and sending 1 Fusion-Material Monster from his Deck to the Graveyard. He chooses Rainbow Neos from his Fusion Deck and sends Rainbow Dragon (4000/0) from his main Deck to the Graveyard. As long as Prisma is on the field, it is treated as Rainbow Dragon.
Activates Arms Hole. This prevents Jaden from summoning a Monster this turn, but he can discard 1 card to add an Equip Spell Card from his Deck to his hand. Discarding Necro Gardna, he adds Rainbow Veil to his hand and equips it to Rainbow Neos
With 2 Chronicle Counters on her "Spell Chronicle", Yubel removes them and activates its effect. Jaden can now choose 1 of the 3 remaining cards Yubel removed from play to add to her hand; he selects Mystical Space Typhoon.
Activates another of Rainbow Neos's effects, sending Elemental Hero Clayman to the Graveyard to return all monsters Yubel controls on the field to her Deck
Jaden activates Alchemy Cycle, reducing Rainbow Neos's ATK to 0 and preventing him from destruction in battle, but removing it from play during the End Phase. Alchemy Cycle also allows Jaden to draw 1 card from his Deck.
Jaden activates Mirage Tube, negating the attack and inflicting damage to Yubel's LP equal to Neos's ATK (Yubel: 400 LP) (NOTE: The real Mirage Tube only inflicts 1000 points of damage to the opponent)
After Jaden counters Yubel's attack, he suddenly has a flashback of his past life as The Supreme King.
With 2 Chronicle Counters on her Spell Chronicle, Yubel removes them and activates its effect, allowing Jaden to select 1 of the remaining 2 cards she removed from play; Jaden chooses Super Polymerization.